Pseudomonas stutzeri RCH2, Psest_0445

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00065
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00065 gaf_1 IPR003018 GAF domain 182 336 1.8E-13
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 637 886 1.05E-88
SMART SM00052 duf2_2 IPR001633 EAL domain 632 878 1.7E-113
Pfam PF00563 EAL domain IPR001633 EAL domain 638 873 2.7E-74
SMART SM00091 pas_2 IPR000014 PAS domain 339 405 2.7E-6
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 635 885 1.3E-98
Pfam PF01590 GAF domain IPR003018 GAF domain 188 325 3.6E-14
SMART SM00091 pas_2 IPR000014 PAS domain 14 87 18.0
Gene3D G3DSA:3.30.450.40 - IPR029016 GAF-like domain superfamily 162 337 4.6E-23
FunFam G3DSA:3.20.20.450:FF:000001 Cyclic di-GMP phosphodiesterase yahA - - 633 888 7.6E-96
CDD cd01949 GGDEF IPR000160 GGDEF domain 465 620 7.09651E-53
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 464 634 9.4E-50
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 460 621 9.6E-37
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 464 618 2.6E-38
SMART SM00267 duf1_3 IPR000160 GGDEF domain 453 622 1.3E-51
Pfam PF13426 PAS domain IPR000014 PAS domain 351 451 2.1E-13
PANTHER PTHR44757 DIGUANYLATE CYCLASE DGCP - - 132 880 0.0
CDD cd00130 PAS IPR000014 PAS domain 348 450 9.47949E-10
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 345 451 8.2E-21
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 469 623 2.82E-41
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 339 458 3.5E-14
SMART SM00086 pac_2 IPR001610 PAC motif 411 453 1.1E-4
Gene3D G3DSA:3.30.450.20 PAS domain - - 338 463 3.9E-25
CDD cd01948 EAL IPR001633 EAL domain 638 875 4.66687E-99
SUPERFAMILY SSF55781 GAF domain-like - - 188 330 7.85E-23

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.