Pseudomonas stutzeri RCH2, Psest_0727
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Cellular Component | GO:0016020 | membrane |
Inferred from Sequence Model
Term mapped from: InterPro:SM00283
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0007165 | signal transduction |
Inferred from Sequence Model
Term mapped from: InterPro:SM00283
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
|
|
Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | psh02030 | Bacterial chemotaxis | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | psh02020 | Two-component system | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| PANTHER | PTHR32089 | METHYL-ACCEPTING CHEMOTAXIS PROTEIN MCPB | - | - | 157 | 675 | 1.2E-107 |
| FunFam | G3DSA:1.10.287.950:FF:000001 | Methyl-accepting chemotaxis sensory transducer | - | - | 348 | 676 | 3.3E-94 |
| SMART | SM00283 | MA_2 | IPR004089 | Methyl-accepting chemotaxis protein (MCP) signalling domain | 414 | 675 | 3.0E-78 |
| CDD | cd06225 | HAMP | - | - | 353 | 393 | 1.78154E-7 |
| SUPERFAMILY | SSF58104 | Methyl-accepting chemotaxis protein (MCP) signaling domain | - | - | 367 | 676 | 1.11E-75 |
| Pfam | PF00015 | Methyl-accepting chemotaxis protein (MCP) signalling domain | IPR004089 | Methyl-accepting chemotaxis protein (MCP) signalling domain | 487 | 641 | 5.3E-41 |
| Coils | Coil | Coil | - | - | 213 | 240 | - |
| SMART | SM00304 | HAMP_11 | IPR003660 | HAMP domain | 402 | 452 | 6.2 |
| SMART | SM00304 | HAMP_11 | IPR003660 | HAMP domain | 347 | 399 | 1.7E-9 |
| CDD | cd11386 | MCP_signal | - | - | 441 | 613 | 4.77918E-46 |
| Gene3D | G3DSA:1.10.287.950 | - | - | - | 349 | 676 | 1.3E-74 |
| Pfam | PF00672 | HAMP domain | IPR003660 | HAMP domain | 350 | 395 | 1.9E-8 |
| Coils | Coil | Coil | - | - | 89 | 109 | - |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.