Pseudomonas stutzeri RCH2, Psest_1618

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0009089 lysine biosynthetic process via diaminopimelate
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01246
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016787 hydrolase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01546
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0009014 succinyl-diaminopimelate desuccinylase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01246
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG psh01230 Biosynthesis of amino acids 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psh01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psh00300 Lysine biosynthesis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psh01120 Microbial metabolism in diverse environments 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.40.630.10 Zn peptidases - - 7 252 2.2E-58
CDD cd03891 M20_DapE_proteobac - - 10 373 0.0
Hamap MF_01690 Succinyl-diaminopimelate desuccinylase [dapE]. IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria 7 381 51.782253
SUPERFAMILY SSF55031 Bacterial exopeptidase dimerisation domain IPR036264 Bacterial exopeptidase dimerisation domain 185 294 1.64E-29
PANTHER PTHR43808 ACETYLORNITHINE DEACETYLASE - - 9 377 2.9E-65
Pfam PF07687 Peptidase dimerisation domain IPR011650 Peptidase M20, dimerisation domain 181 287 6.0E-27
NCBIfam TIGR01246 JCVI: succinyl-diaminopimelate desuccinylase IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria 10 379 0.0
Pfam PF01546 Peptidase family M20/M25/M40 IPR002933 Peptidase M20 67 377 6.0E-42
FunFam G3DSA:3.30.70.360:FF:000011 Succinyl-diaminopimelate desuccinylase - - 185 295 9.5E-35
SUPERFAMILY SSF53187 Zn-dependent exopeptidases - - 8 380 1.39E-63
FunFam G3DSA:3.40.630.10:FF:000005 Succinyl-diaminopimelate desuccinylase - - 7 250 2.2E-126
Gene3D G3DSA:3.40.630.10 Zn peptidases - - 263 382 2.0E-17

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.