Pseudomonas stutzeri RCH2, Psest_1639

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01010
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008173 RNA methyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR11061
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008757 S-adenosylmethionine-dependent methyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF53335
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006396 RNA processing
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR11061
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd02440 AdoMet_MTases - - 308 394 4.85841E-10
SUPERFAMILY SSF53335 S-adenosyl-L-methionine-dependent methyltransferases IPR029063 S-adenosyl-L-methionine-dependent methyltransferase superfamily 86 449 3.72E-79
Pfam PF01938 TRAM domain IPR002792 TRAM domain 23 75 2.3E-9
PANTHER PTHR11061 RNA M5U METHYLTRANSFERASE IPR010280 (Uracil-5)-methyltransferase family 271 448 1.4E-83
MobiDBLite mobidb-lite consensus disorder prediction - - 1 25 -
SUPERFAMILY SSF50249 Nucleic acid-binding proteins IPR012340 Nucleic acid-binding, OB-fold 14 75 4.97E-13
FunFam G3DSA:3.40.50.150:FF:000009 23S rRNA (Uracil(1939)-C(5))-methyltransferase RlmD - - 276 444 2.3E-56
NCBIfam TIGR00479 JCVI: 23S rRNA (uracil-5-)-methyltransferase RlmD - - 271 442 6.6E-60
Gene3D G3DSA:3.40.50.150 Vaccinia Virus protein VP39 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase superfamily 98 444 2.5E-112
Gene3D G3DSA:2.40.50.1070 - - - 145 282 2.5E-112
Hamap MF_01010 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [rlmD]. IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 28 450 64.399429
Pfam PF05958 tRNA (Uracil-5-)-methyltransferase IPR010280 (Uracil-5)-methyltransferase family 279 449 1.3E-23
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 16 97 1.5E-20

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.