Pseudomonas stutzeri RCH2, Psest_2634
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0016620 | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor |
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.40.309.10
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
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| Molecular Function | GO:0016491 | oxidoreductase activity |
Inferred from Sequence Model
Term mapped from: InterPro:PF00171
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0019285 | glycine betaine biosynthetic process from choline |
Inferred from Sequence Model
Term mapped from: InterPro:MF_00804
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0008802 | betaine-aldehyde dehydrogenase activity |
Inferred from Sequence Model
Term mapped from: InterPro:MF_00804
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0046872 | metal ion binding |
Inferred from Sequence Model
Term mapped from: InterPro:MF_00804
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | psh00260 | Glycine, serine and threonine metabolism | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| MetaCyc | choline degradation IV | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| MetaCyc | glycine betaine biosynthesis II (Gram-positive bacteria) | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| KEGG | psh01100 | Metabolic pathways | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| FunFam | G3DSA:3.40.605.10:FF:000026 | Aldehyde dehydrogenase, putative | - | - | 451 | 477 | 4.8E-11 |
| Hamap | MF_00804 | Betaine aldehyde dehydrogenase [betB]. | IPR011264 | Betaine aldehyde dehydrogenase | 4 | 490 | 58.650028 |
| FunFam | G3DSA:3.40.605.10:FF:000007 | NAD/NADP-dependent betaine aldehyde dehydrogenase | - | - | 11 | 283 | 2.4E-105 |
| Gene3D | G3DSA:3.40.309.10 | Aldehyde Dehydrogenase; Chain A, domain 2 | IPR016163 | Aldehyde dehydrogenase, C-terminal | 255 | 448 | 0.0 |
| FunFam | G3DSA:3.40.309.10:FF:000014 | NAD/NADP-dependent betaine aldehyde dehydrogenase | - | - | 255 | 448 | 2.0E-103 |
| Pfam | PF00171 | Aldehyde dehydrogenase family | IPR015590 | Aldehyde dehydrogenase domain | 16 | 479 | 0.0 |
| NCBIfam | TIGR01804 | JCVI: betaine-aldehyde dehydrogenase | IPR011264 | Betaine aldehyde dehydrogenase | 10 | 477 | 0.0 |
| CDD | cd07090 | ALDH_F9_TMBADH | - | - | 27 | 484 | 0.0 |
| Gene3D | G3DSA:3.40.605.10 | Aldehyde Dehydrogenase; Chain A, domain 1 | IPR016162 | Aldehyde dehydrogenase, N-terminal | 10 | 478 | 0.0 |
| SUPERFAMILY | SSF53720 | ALDH-like | IPR016161 | Aldehyde/histidinol dehydrogenase | 5 | 482 | 0.0 |
| PANTHER | PTHR11699 | ALDEHYDE DEHYDROGENASE-RELATED | - | - | 7 | 482 | 0.0 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.