Pseudomonas stutzeri RCH2, Psest_2872

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00154
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003697 single-stranded DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00154
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016887 ATPase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00382
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00154
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG psh03440 Homologous recombination 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR45900 RECA IPR013765 DNA recombination and repair protein RecA 3 329 0.0
PRINTS PR00142 RecA protein signature IPR013765 DNA recombination and repair protein RecA 243 272 1.1E-84
NCBIfam TIGR02012 JCVI: recombinase RecA IPR013765 DNA recombination and repair protein RecA 4 324 0.0
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 4 267 2.25E-64
Pfam PF00154 recA bacterial DNA recombination protein IPR013765 DNA recombination and repair protein RecA 7 267 0.0
PRINTS PR00142 RecA protein signature IPR013765 DNA recombination and repair protein RecA 127 156 1.1E-84
SUPERFAMILY SSF54752 RecA protein, C-terminal domain IPR023400 DNA recombination and repair protein RecA, C-terminal 269 325 2.09E-20
PRINTS PR00142 RecA protein signature IPR013765 DNA recombination and repair protein RecA 210 238 1.1E-84
SMART SM00382 AAA_5 IPR003593 AAA+ ATPase domain 57 228 1.5E-10
PRINTS PR00142 RecA protein signature IPR013765 DNA recombination and repair protein RecA 297 314 1.1E-84
FunFam G3DSA:3.40.50.300:FF:000087 Recombinase RecA - - 33 330 0.0
PRINTS PR00142 RecA protein signature IPR013765 DNA recombination and repair protein RecA 93 122 1.1E-84
Hamap MF_00268 Protein RecA [recA]. IPR013765 DNA recombination and repair protein RecA 5 329 51.14621
CDD cd00983 RecA IPR013765 DNA recombination and repair protein RecA 36 269 0.0
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 34 328 9.0E-127
PRINTS PR00142 RecA protein signature IPR013765 DNA recombination and repair protein RecA 165 194 1.1E-84

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.