Pseudomonas stutzeri RCH2, Psest_3008

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0009236 cobalamin biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00028
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00028
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG psh01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psh00860 Porphyrin and chlorophyll metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 2 240 1.6E-60
SUPERFAMILY SSF52317 Class I glutamine amidotransferase-like IPR029062 Class I glutamine amidotransferase-like 250 443 3.67E-40
Gene3D G3DSA:3.40.50.880 - IPR029062 Class I glutamine amidotransferase-like 255 380 8.6E-16
Hamap MF_00028 Cobyric acid synthase [cobQ]. IPR004459 Cobyric acid synthase CobQ 1 484 217.734818
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 1 237 1.46E-57
NCBIfam TIGR00313 JCVI: cobyric acid synthase CobQ IPR004459 Cobyric acid synthase CobQ 4 473 0.0
Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain 4 228 1.9E-22
PANTHER PTHR21343 DETHIOBIOTIN SYNTHETASE - - 1 482 0.0
CDD cd01750 GATase1_CobQ IPR033949 Cobyric acid synthase, glutamine amidotransferase type 1 251 440 1.7221E-69
Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain IPR011698 CobB/CobQ-like glutamine amidotransferase 250 433 6.4E-58
CDD cd05389 CobQ_N IPR047045 Cobyric acid synthase, N-terminal domain 3 224 8.51528E-121

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.