Pseudomonas stutzeri RCH2, Psest_3842

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00392
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00392
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00392 Bacterial regulatory proteins, gntR family IPR000524 Transcription regulator HTH, GntR 14 75 2.9E-15
Coils Coil Coil - - 222 252 -
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 7 79 1.63E-19
PRINTS PR00035 GntR bacterial regulatory protein HTH signature IPR000524 Transcription regulator HTH, GntR 35 49 1.5E-6
PRINTS PR00035 GntR bacterial regulatory protein HTH signature IPR000524 Transcription regulator HTH, GntR 49 65 1.5E-6
Pfam PF07729 FCD domain IPR011711 GntR, C-terminal 100 230 3.8E-25
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 7 80 4.3E-20
SUPERFAMILY SSF48008 GntR ligand-binding domain-like IPR008920 Transcription regulator FadR/GntR, C-terminal 97 238 8.37E-26
SMART SM00895 FCD_2 IPR011711 GntR, C-terminal 100 231 7.8E-24
CDD cd07377 WHTH_GntR IPR000524 Transcription regulator HTH, GntR 12 76 6.1779E-19
PANTHER PTHR43537 TRANSCRIPTIONAL REGULATOR, GNTR FAMILY - - 6 242 5.3E-45
Gene3D G3DSA:1.20.120.530 - IPR008920 Transcription regulator FadR/GntR, C-terminal 99 239 7.1E-33
SMART SM00345 gntr3 IPR000524 Transcription regulator HTH, GntR 16 75 2.1E-13

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.