Pseudomonas stutzeri RCH2, Psest_3843
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Cellular Component | GO:0005737 | cytoplasm |
Inferred from Sequence Model
Term mapped from: InterPro:PTHR38683
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0008813 | chorismate lyase activity |
Inferred from Sequence Model
Term mapped from: InterPro:PTHR38683
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0006744 | ubiquinone biosynthetic process |
Inferred from Sequence Model
Term mapped from: InterPro:PTHR38683
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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|
Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | psh00130 | Ubiquinone and other terpenoid-quinone biosynthesis | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| MetaCyc | 4-hydroxybenzoate biosynthesis II (bacteria) | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| MetaCyc | spongiadioxin C biosynthesis | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| MetaCyc | ubiquinol-8 biosynthesis (eukaryotic) | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| KEGG | psh01100 | Metabolic pathways | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| MetaCyc | polybrominated dihydroxylated diphenyl ethers biosynthesis | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| MetaCyc | polybrominated phenols biosynthesis | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| MetaCyc | phenolphthiocerol biosynthesis | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| MetaCyc | tetrahydromethanopterin biosynthesis | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| MetaCyc | p-HBAD biosynthesis | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| KEGG | psh01110 | Biosynthesis of secondary metabolites | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Gene3D | G3DSA:3.40.1410.10 | - | IPR028978 | Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily | 6 | 177 | 1.1E-48 |
| SUPERFAMILY | SSF64288 | Chorismate lyase-like | IPR028978 | Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily | 9 | 178 | 4.89E-49 |
| Hamap | MF_01632 | Chorismate pyruvate-lyase [ubiC]. | IPR007440 | Chorismate--pyruvate lyase | 10 | 179 | 26.686676 |
| PANTHER | PTHR38683 | CHORISMATE PYRUVATE-LYASE | IPR007440 | Chorismate--pyruvate lyase | 6 | 182 | 8.9E-51 |
| Pfam | PF04345 | Chorismate lyase | IPR007440 | Chorismate--pyruvate lyase | 11 | 180 | 8.1E-53 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.