Pseudomonas stutzeri RCH2, Psest_4208

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Biological Process	GO:0006355	regulation of transcription, DNA-templated	ISM Inferred from Sequence Model Term mapped from: InterPro:PF12833	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003700	DNA-binding transcription factor activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PF12833	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0043565	sequence-specific DNA binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF12833	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Pfam	PF02311	AraC-like ligand binding domain	IPR003313	AraC-type arabinose-binding/dimerisation domain	33	131	1.9E-12
SUPERFAMILY	SSF46689	Homeodomain-like	IPR009057	Homeobox-like domain superfamily	216	262	8.51E-9
Pfam	PF12833	Helix-turn-helix domain	IPR018060	DNA binding HTH domain, AraC-type	185	262	1.5E-22
CDD	cd06124	cupin_NimR-like_N	-	-	24	118	2.77385E-38
PANTHER	PTHR11019	HTH-TYPE TRANSCRIPTIONAL REGULATOR NIMR	-	-	12	262	1.1E-80
Gene3D	G3DSA:1.10.10.60	-	-	-	160	264	1.2E-22
SUPERFAMILY	SSF51182	RmlC-like cupins	IPR011051	RmlC-like cupin domain superfamily	22	191	5.34E-20
Gene3D	G3DSA:2.60.120.10	Jelly Rolls	IPR014710	RmlC-like jelly roll fold	24	105	5.8E-8
SMART	SM00342	aracneu4	IPR018060	DNA binding HTH domain, AraC-type	179	261	3.2E-26
FunFam	G3DSA:1.10.10.60:FF:000132	AraC family transcriptional regulator	-	-	160	264	5.9E-36

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.