Pseudomonas mendocina ymp, Pmen_0729

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0042910 xenobiotic transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01554
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01554
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0055085 transmembrane transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01554
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0015297 antiporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01554
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF01554 MatE IPR002528 Multi antimicrobial extrusion protein 23 183 4.9E-25
TIGRFAM TIGR00797 matE: MATE efflux family protein IPR002528 Multi antimicrobial extrusion protein 23 416 5.1E-78
CDD cd13136 MATE_DinF_like IPR044644 Multi antimicrobial extrusion protein DinF-like 13 435 2.12942E-119
Pfam PF01554 MatE IPR002528 Multi antimicrobial extrusion protein 248 406 1.8E-17
PANTHER PTHR42893:SF38 PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED - - 10 429 4.9E-62
PANTHER PTHR42893 PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED IPR044644 Multi antimicrobial extrusion protein DinF-like 10 429 4.9E-62

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.