Pseudomonas mendocina ymp, Pmen_0734

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00304
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016021 integral component of membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00304
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00015
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pmy02020 Two-component system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pmy02030 Bacterial chemotaxis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00283 MA_2 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 381 642 6.0E-80
Coils Coil Coil - - 449 469 -
PANTHER PTHR32089 METHYL-ACCEPTING CHEMOTAXIS PROTEIN MCPB - - 51 642 3.9E-121
SUPERFAMILY SSF58104 Methyl-accepting chemotaxis protein (MCP) signaling domain - - 334 643 5.75E-77
Gene3D G3DSA:3.30.450.20 PAS domain - - 159 291 2.2E-19
Pfam PF02743 Cache domain IPR033479 Double Cache domain 1 54 274 2.4E-17
CDD cd06225 HAMP - - 315 360 2.73361E-9
Pfam PF00672 HAMP domain IPR003660 HAMP domain 309 360 9.6E-14
CDD cd11386 MCP_signal - - 408 607 1.59672E-51
PANTHER PTHR32089:SF39 METHYL-ACCEPTING CHEMOTAXIS PROTEIN HLYB - - 51 642 3.9E-121
Gene3D G3DSA:1.10.287.950 - - - 313 643 1.6E-76
SMART SM00304 HAMP_11 IPR003660 HAMP domain 312 366 9.9E-13
CDD cd12912 PDC2_MCP_like - - 190 280 9.2358E-15
Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 428 609 7.4E-42

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.