Pseudomonas mendocina ymp, Pmen_4473

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0005975 carbohydrate metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02782
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0005997 xylulose metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01312
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004856 xylulokinase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01312
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016773 phosphotransferase activity, alcohol group as acceptor
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02782
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pmy00040 Pentose and glucuronate interconversions 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pmy01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.30.420.40 253 491 6.2E-69
Gene3D G3DSA:3.30.420.40 1 251 1.4E-78
ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. IPR018483 Carbohydrate kinase, FGGY, conserved site 354 375 -
Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain IPR018485 Carbohydrate kinase, FGGY, C-terminal 261 441 1.0E-29
Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain IPR018484 Carbohydrate kinase, FGGY, N-terminal 1 250 1.8E-74
TIGRFAM TIGR01312 XylB: xylulokinase IPR006000 Xylulokinase 3 488 0.0
SUPERFAMILY SSF53067 252 492 5.0E-56
PIRSF PIRSF000538 IPR000577 Carbohydrate kinase, FGGY 1 499 2.4E-125
SUPERFAMILY SSF53067 2 252 2.2E-66
CDD cd07809 FGGY_D-XK_1 1 487 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.