Pseudomonas mendocina NK-01, MDS_0003

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS00617
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS00617
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003697 single-stranded DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS00617
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pmk03440 Homologous recombination 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.40.50.300 7 334 1.9E-84
SUPERFAMILY SSF52540 IPR027417 P-loop containing nucleoside triphosphate hydrolase 1 361 3.61E-34
Gene3D G3DSA:1.20.1050.90 IPR042174 DNA-binding RecF, domain 2 121 299 1.9E-84
ProSitePatterns PS00618 RecF protein signature 2. IPR018078 DNA-binding, RecF, conserved site 300 318 -
Pfam PF02463 RecF/RecN/SMC N terminal domain IPR003395 RecF/RecN/SMC, N-terminal 3 357 5.6E-36
Hamap MF_00365 DNA replication and repair protein RecF [recF]. IPR001238 DNA-binding, RecF 1 367 95.22
ProSitePatterns PS00617 RecF protein signature 1. IPR018078 DNA-binding, RecF, conserved site 118 138 -
TIGRFAM TIGR00611 recf: DNA replication and repair protein RecF IPR001238 DNA-binding, RecF 1 359 8.0E-117

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.