Pseudomonas mendocina NK-01, MDS_0013

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pmk02025 Biofilm formation - Pseudomonas aeruginosa 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR03373 JCVI: type VI secretion system-associated protein TagF IPR017748 T6S-associated protein TagF 3 136 6.3E-48
PIRSF PIRSF029287 UCP029287 IPR017748 T6S-associated protein TagF 1 214 4.4E-69
Pfam PF09867 TagF N-terminal domain, Type VI secretion system-associated IPR017748 T6S-associated protein TagF 3 136 1.5E-49
Gene3D G3DSA:3.40.1730.10 pa0076 domain IPR038225 T6S-associated protein TagF superfamily 1 213 2.3E-74

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.