Pseudomonas mendocina NK-01, MDS_0019
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | pmk02025 | Biofilm formation - Pseudomonas aeruginosa | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Pfam | PF06812 | ImpA, N-terminal, type VI secretion system | IPR010657 | ImpA, N-terminal | 7 | 129 | 2.8E-33 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 239 | 265 | - |
| PANTHER | PTHR37951 | CYTOPLASMIC PROTEIN-RELATED | IPR017740 | Type VI secretion system protein TssA-like | 4 | 336 | 4.8E-80 |
| NCBIfam | TIGR03363 | JCVI: type VI secretion system protein TssA | IPR017740 | Type VI secretion system protein TssA-like | 4 | 335 | 1.7E-79 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.