Pseudomonas mendocina NK-01, MDS_0078

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0004109 coproporphyrinogen oxidase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF000166
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006779 porphyrin-containing compound biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF000166
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
MetaCyc 3,8-divinyl-chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent) InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
KEGG pmk01110 Biosynthesis of secondary metabolites 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pmk00860 Porphyrin and chlorophyll metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pmk01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF102886 Coproporphyrinogen III oxidase IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily 18 316 0.0
Pfam PF01218 Coproporphyrinogen III oxidase IPR001260 Coproporphyrinogen III oxidase, aerobic 23 315 1.3E-130
PRINTS PR00073 Coprogen oxidase signature IPR001260 Coproporphyrinogen III oxidase, aerobic 248 275 1.3E-86
Gene3D G3DSA:3.40.1500.10 Coproporphyrinogen III oxidase, aerobic IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily 10 319 0.0
PRINTS PR00073 Coprogen oxidase signature IPR001260 Coproporphyrinogen III oxidase, aerobic 62 83 1.3E-86
PRINTS PR00073 Coprogen oxidase signature IPR001260 Coproporphyrinogen III oxidase, aerobic 45 61 1.3E-86
FunFam G3DSA:3.40.1500.10:FF:000001 Oxygen-dependent coproporphyrinogen-III oxidase - - 16 316 0.0
PIRSF PIRSF000166 Coproporphyri_ox IPR001260 Coproporphyrinogen III oxidase, aerobic 5 317 6.9E-126
PRINTS PR00073 Coprogen oxidase signature IPR001260 Coproporphyrinogen III oxidase, aerobic 276 302 1.3E-86
PANTHER PTHR10755 COPROPORPHYRINOGEN III OXIDASE, MITOCHONDRIAL IPR001260 Coproporphyrinogen III oxidase, aerobic 14 316 1.2E-124
PRINTS PR00073 Coprogen oxidase signature IPR001260 Coproporphyrinogen III oxidase, aerobic 104 128 1.3E-86
PRINTS PR00073 Coprogen oxidase signature IPR001260 Coproporphyrinogen III oxidase, aerobic 139 161 1.3E-86
Hamap MF_00333 Oxygen-dependent coproporphyrinogen-III oxidase [hemF]. IPR001260 Coproporphyrinogen III oxidase, aerobic 17 291 56.069771
PRINTS PR00073 Coprogen oxidase signature IPR001260 Coproporphyrinogen III oxidase, aerobic 176 205 1.3E-86

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.