Pseudomonas mendocina NK-01, MDS_0140
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| SMART | SM00710 | pbh1 | IPR006626 | Parallel beta-helix repeat | 230 | 252 | 880.0 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 417 | 433 | - |
| NCBIfam | TIGR03804 | JCVI: parallel beta-helix repeat (two copies) | IPR022441 | Parallel beta-helix repeat-2 | 286 | 327 | 1.1E-4 |
| SMART | SM00710 | pbh1 | IPR006626 | Parallel beta-helix repeat | 134 | 163 | 920.0 |
| SMART | SM00710 | pbh1 | IPR006626 | Parallel beta-helix repeat | 112 | 133 | 8.3 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 409 | 433 | - |
| SMART | SM00710 | pbh1 | IPR006626 | Parallel beta-helix repeat | 82 | 110 | 2300.0 |
| SMART | SM00710 | pbh1 | IPR006626 | Parallel beta-helix repeat | 186 | 207 | 850.0 |
| SMART | SM00710 | pbh1 | IPR006626 | Parallel beta-helix repeat | 313 | 351 | 3400.0 |
| SMART | SM00710 | pbh1 | IPR006626 | Parallel beta-helix repeat | 164 | 185 | 1.5 |
| NCBIfam | TIGR03804 | JCVI: parallel beta-helix repeat (two copies) | IPR022441 | Parallel beta-helix repeat-2 | 158 | 197 | 3.9E-5 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | IPR011050 | Pectin lyase fold/virulence factor | 40 | 405 | 1.03E-56 |
| SMART | SM00722 | complete | IPR006633 | Carbohydrate-binding/sugar hydrolysis domain | 44 | 184 | 7.9E-20 |
| NCBIfam | TIGR04247 | JCVI: nitrous oxide reductase family maturation protein NosD | IPR026464 | Nitrous oxide reductase family maturation protein NosD | 35 | 418 | 0.0 |
| Pfam | PF05048 | Periplasmic copper-binding protein (NosD) | IPR007742 | Periplasmic copper-binding protein NosD, beta helix domain | 141 | 354 | 1.3E-53 |
| SMART | SM00710 | pbh1 | IPR006626 | Parallel beta-helix repeat | 208 | 229 | 2200.0 |
| SMART | SM00710 | pbh1 | IPR006626 | Parallel beta-helix repeat | 290 | 311 | 480.0 |
| Gene3D | G3DSA:2.160.20.10 | - | IPR012334 | Pectin lyase fold | 29 | 353 | 1.2E-21 |
| SMART | SM00722 | complete | IPR006633 | Carbohydrate-binding/sugar hydrolysis domain | 190 | 365 | 1.2E-29 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.