Pseudomonas mendocina NK-01, MDS_0182

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00388
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0000160 phosphorelay signal transduction system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00072
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0000155 phosphorelay sensor kinase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00388
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF13185
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0016310 phosphorylation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00344
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016772 transferase activity, transferring phosphorus-containing groups
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00344
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.40.50.2300 - - - 887 1035 4.5E-19
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 1039 1150 1.5E-29
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 639 653 1.5E-15
FunFam G3DSA:3.30.565.10:FF:000010 Sensor histidine kinase RcsC - - 554 716 1.8E-47
SUPERFAMILY SSF55781 GAF domain-like - - 215 382 9.38E-24
SUPERFAMILY SSF52172 CheY-like IPR011006 CheY-like superfamily 890 1015 2.28E-19
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 657 667 1.5E-15
SUPERFAMILY SSF52172 CheY-like IPR011006 CheY-like superfamily 767 882 9.39E-27
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 698 711 1.5E-15
SMART SM00387 HKATPase_4 IPR003594 Histidine kinase/HSP90-like ATPase 602 714 4.0E-36
CDD cd00156 REC - - 893 984 1.70266E-14
SMART SM00448 REC_2 IPR001789 Signal transduction response regulator, receiver domain 890 1004 2.0E-12
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 770 876 9.7E-16
CDD cd00082 HisKA IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain 488 551 1.35385E-12
Gene3D G3DSA:3.30.565.10 - IPR036890 Histidine kinase/HSP90-like ATPase superfamily 554 718 1.6E-47
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 892 983 2.0E-15
CDD cd17546 REC_hyHK_CKI1_RcsC-like - - 1038 1150 1.77052E-42
SUPERFAMILY SSF52172 CheY-like IPR011006 CheY-like superfamily 1034 1155 8.25E-40
SUPERFAMILY SSF47384 Homodimeric domain of signal transducing histidine kinase IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily 472 556 4.9E-21
PANTHER PTHR45339 HYBRID SIGNAL TRANSDUCTION HISTIDINE KINASE J - - 116 955 0.0
Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPR003594 Histidine kinase/HSP90-like ATPase 603 712 1.2E-25
Gene3D G3DSA:3.30.450.40 - IPR029016 GAF-like domain superfamily 223 393 1.1E-23
CDD cd16922 HATPase_EvgS-ArcB-TorS-like - - 609 711 7.56352E-50
SMART SM00065 gaf_1 IPR003018 GAF domain 247 391 3.4E-12
SUPERFAMILY SSF55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase IPR036890 Histidine kinase/HSP90-like ATPase superfamily 544 712 4.71E-45
Gene3D G3DSA:3.40.50.2300 - - - 768 886 1.3E-26
SMART SM00448 REC_2 IPR001789 Signal transduction response regulator, receiver domain 1036 1150 1.9E-41
Gene3D G3DSA:3.40.50.2300 - - - 1036 1160 3.5E-45
Coils Coil Coil - - 871 891 -
CDD cd19410 HK9-like_sensor - - 43 165 3.02849E-31
Pfam PF05227 CHASE3 domain IPR007891 CHASE3 40 172 3.1E-37
Pfam PF00512 His Kinase A (phospho-acceptor) domain IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain 488 555 1.7E-15
Coils Coil Coil - - 383 490 -
Pfam PF13185 GAF domain IPR003018 GAF domain 248 382 4.5E-16
SMART SM00388 HisKA_10 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain 487 555 1.5E-20
MobiDBLite mobidb-lite consensus disorder prediction - - 738 758 -
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 674 692 1.5E-15
SMART SM00448 REC_2 IPR001789 Signal transduction response regulator, receiver domain 768 878 4.1E-22
Gene3D G3DSA:1.10.287.130 - - - 452 553 1.1E-25

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.