Pseudomonas mendocina NK-01, MDS_0653

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0016757 transferase activity, transferring glycosyl groups
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01075
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0009244 lipopolysaccharide core region biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02193
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008920 lipopolysaccharide heptosyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02193
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pmk01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pmk00540 Lipopolysaccharide biosynthesis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF53756 2 321 1.29E-72
TIGRFAM TIGR02193 heptsyl_trn_I: lipopolysaccharide heptosyltransferase I IPR011908 Lipopolysaccharide heptosyltransferase I 2 295 1.2E-117
Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) IPR002201 Glycosyl transferase, family 9 73 295 1.7E-71
Gene3D G3DSA:3.40.50.2000 1 160 9.2E-59
CDD cd03789 GT9_LPS_heptosyltransferase 2 317 3.30175E-57
Gene3D G3DSA:3.40.50.2000 163 302 9.9E-46

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.