Pseudomonas mendocina NK-01, MDS_2255

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0004108 citrate (Si)-synthase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd06114
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006099 tricarboxylic acid cycle
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00143
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF48256
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0005737 cytoplasm
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd06114
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pmk00630 Glyoxylate and dicarboxylate metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pmk01110 Biosynthesis of secondary metabolites 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pmk01230 Biosynthesis of amino acids 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pmk01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pmk01200 Carbon metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pmk01120 Microbial metabolism in diverse environments 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pmk01210 2-Oxocarboxylic acid metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pmk01130 Biosynthesis of antibiotics 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pmk00020 Citrate cycle (TCA cycle) 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF48256 Citrate synthase IPR036969 Citrate synthase superfamily 5 421 0.0
NCBIfam TIGR01798 JCVI: citrate synthase IPR010953 Citrate synthase, type I 15 420 0.0
PRINTS PR00143 Citrate synthase signature IPR002020 Citrate synthase 219 234 1.1E-55
Gene3D G3DSA:1.10.230.10 - IPR016143 Citrate synthase-like, small alpha subdomain 268 376 0.0
Gene3D G3DSA:2.20.28.60 - - - 1 50 6.8E-22
FunFam G3DSA:1.10.230.10:FF:000002 Citrate synthase - - 268 376 8.4E-49
PIRSF PIRSF001369 Citrate_synth IPR024176 Citrate synthase, bacterial-type 37 425 0.0
PRINTS PR00143 Citrate synthase signature IPR002020 Citrate synthase 379 393 1.1E-55
CDD cd06114 EcCS_like IPR010953 Citrate synthase, type I 18 415 0.0
PRINTS PR00143 Citrate synthase signature IPR002020 Citrate synthase 241 269 1.1E-55
PRINTS PR00143 Citrate synthase signature IPR002020 Citrate synthase 296 316 1.1E-55
PRINTS PR00143 Citrate synthase signature IPR002020 Citrate synthase 165 178 1.1E-55
Gene3D G3DSA:1.10.580.10 Citrate Synthase, domain 1 IPR016142 Citrate synthase-like, large alpha subdomain 60 409 0.0
Pfam PF00285 Citrate synthase, C-terminal domain IPR002020 Citrate synthase 46 410 0.0
PANTHER PTHR42871 CITRATE SYNTHASE - - 1 421 0.0
PRINTS PR00143 Citrate synthase signature IPR002020 Citrate synthase 359 375 1.1E-55

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.