Pseudomonas mendocina NK-01, MDS_2260

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0004591 oxoglutarate dehydrogenase (succinyl-transferring) activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR23152
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006099 tricarboxylic acid cycle
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR23152
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00676
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0030976 thiamine pyrophosphate binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR23152
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pmk01120 Microbial metabolism in diverse environments 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pmk00310 Lysine degradation 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pmk01200 Carbon metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pmk00020 Citrate cycle (TCA cycle) 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pmk01130 Biosynthesis of antibiotics 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pmk01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pmk00380 Tryptophan metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pmk01110 Biosynthesis of secondary metabolites 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:3.40.50.970:FF:000014 2-oxoglutarate dehydrogenase E1 component - - 171 537 0.0
SMART SM00861 Transket_pyr_3 IPR005475 Transketolase-like, pyrimidine-binding domain 599 792 7.6E-60
SUPERFAMILY SSF52518 Thiamin diphosphate-binding fold (THDP-binding) IPR029061 Thiamin diphosphate-binding fold 582 799 9.42E-52
Gene3D G3DSA:3.40.50.11610 - IPR042179 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal domain superfamily 729 940 0.0
Gene3D G3DSA:3.40.50.12470 - - - 561 808 0.0
Pfam PF16870 2-oxoglutarate dehydrogenase C-terminal IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal 797 941 6.1E-55
PIRSF PIRSF000157 Oxoglu_dh_E1 IPR011603 2-oxoglutarate dehydrogenase E1 component 1 943 0.0
CDD cd02016 TPP_E1_OGDC_like - - 219 480 0.0
Gene3D G3DSA:3.40.50.970 - - - 171 536 0.0
Pfam PF00676 Dehydrogenase E1 component IPR001017 Dehydrogenase, E1 component 220 526 2.2E-52
SUPERFAMILY SSF52518 Thiamin diphosphate-binding fold (THDP-binding) IPR029061 Thiamin diphosphate-binding fold 126 550 1.03E-86
Gene3D G3DSA:1.10.287.1150 TPP helical domain - - 86 170 2.6E-28
FunFam G3DSA:3.40.50.12470:FF:000009 2-oxoglutarate dehydrogenase E1 component - - 561 808 1.4E-96
Pfam PF02779 Transketolase, pyrimidine binding domain IPR005475 Transketolase-like, pyrimidine-binding domain 599 793 4.3E-66
FunFam G3DSA:1.10.287.1150:FF:000004 2-oxoglutarate dehydrogenase E1 component - - 88 170 1.8E-32
Pfam PF16078 2-oxoglutarate dehydrogenase N-terminus IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain 12 50 4.8E-17
NCBIfam TIGR00239 JCVI: 2-oxoglutarate dehydrogenase E1 component IPR011603 2-oxoglutarate dehydrogenase E1 component 15 941 0.0
PANTHER PTHR23152 2-OXOGLUTARATE DEHYDROGENASE IPR011603 2-oxoglutarate dehydrogenase E1 component 13 941 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.