Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
---|---|---|---|---|---|---|
Biological Process | GO:0006310 | DNA recombination |
Inferred from Sequence Model
Term mapped from: InterPro:PF04679
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Biological Process | GO:0006281 | DNA repair |
Inferred from Sequence Model
Term mapped from: InterPro:PF04679
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0005524 | ATP binding |
Inferred from Sequence Model
Term mapped from: InterPro:PF01068
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0003910 | DNA ligase (ATP) activity |
Inferred from Sequence Model
Term mapped from: InterPro:PF04679
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
|
Database | Xref | Pathway | Version | Evidence | PMID |
---|---|---|---|---|---|
KEGG | pmk03450 | Non-homologous end-joining | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
---|---|---|---|---|---|---|---|
Gene3D | G3DSA:2.40.50.140 | - | IPR012340 | Nucleic acid-binding, OB-fold | 402 | 520 | 6.1E-37 |
Gene3D | G3DSA:3.30.1490.70 | - | - | - | 229 | 397 | 1.5E-43 |
CDD | cd07971 | OBF_DNA_ligase_LigD | - | - | 403 | 517 | 1.29241E-51 |
PANTHER | PTHR42705 | BIFUNCTIONAL NON-HOMOLOGOUS END JOINING PROTEIN LIGD | - | - | 248 | 828 | 1.6E-105 |
SUPERFAMILY | SSF56091 | DNA ligase/mRNA capping enzyme, catalytic domain | - | - | 209 | 400 | 5.28E-44 |
MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 192 | 209 | - |
CDD | cd04862 | PaeLigD_Pol_like | IPR033651 | LigD polymerase domain, PaeLigD-type | 568 | 794 | 0.0 |
SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | IPR012340 | Nucleic acid-binding, OB-fold | 403 | 520 | 3.34E-27 |
NCBIfam | TIGR02779 | JCVI: non-homologous end-joining DNA ligase, ligase domain | IPR014146 | DNA ligase D, ligase domain | 219 | 518 | 3.6E-106 |
Pfam | PF13298 | DNA polymerase Ligase (LigD) | IPR014144 | DNA ligase D, 3'-phosphoesterase domain | 39 | 143 | 4.7E-39 |
Gene3D | G3DSA:3.90.920.10 | DNA primase, PRIM domain | - | - | 558 | 840 | 2.1E-99 |
Pfam | PF04679 | ATP dependent DNA ligase C terminal region | IPR012309 | DNA ligase, ATP-dependent, C-terminal | 418 | 512 | 2.1E-23 |
Pfam | PF01068 | ATP dependent DNA ligase domain | IPR012310 | DNA ligase, ATP-dependent, central | 225 | 399 | 4.9E-22 |
CDD | cd07906 | Adenylation_DNA_ligase_LigD_LigC | - | - | 217 | 401 | 1.08101E-77 |
NCBIfam | TIGR02776 | JCVI: DNA ligase D | IPR014143 | DNA ligase D | 228 | 824 | 0.0 |
Gene3D | G3DSA:3.30.470.30 | DNA ligase/mRNA capping enzyme | - | - | 241 | 356 | 1.5E-43 |
MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 185 | 220 | - |
NCBIfam | TIGR02777 | JCVI: DNA ligase D, 3'-phosphoesterase domain | IPR014144 | DNA ligase D, 3'-phosphoesterase domain | 6 | 163 | 4.0E-70 |
MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 1 | 31 | - |
NCBIfam | TIGR02778 | JCVI: non-homologous end-joining DNA ligase, polymerase domain | IPR014145 | DNA ligase D, polymerase domain | 551 | 795 | 4.7E-87 |