Pseudomonas mendocina NK-01, MDS_2435
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Biological Process | GO:0006353 | DNA-templated transcription, termination |
Inferred from Sequence Model
Term mapped from: InterPro:PF07498
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ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Pfam | PF07498 | Rho termination factor, N-terminal domain | IPR011112 | Rho termination factor, N-terminal | 89 | 125 | 4.7E-8 |
| SMART | SM00959 | Rho_N_2_a | IPR011112 | Rho termination factor, N-terminal | 88 | 126 | 0.0031 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 1 | 92 | - |
| Gene3D | G3DSA:1.10.720.10 | - | - | - | 87 | 126 | 1.3E-5 |
| Coils | Coil | Coil | - | - | 114 | 126 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 48 | 67 | - |
| SUPERFAMILY | SSF68912 | Rho N-terminal domain-like | IPR036269 | Rho termination factor, N-terminal domain superfamily | 88 | 125 | 4.32E-6 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 1 | 33 | - |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.