Pseudomonas mendocina NK-01, MDS_2512

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0055085 transmembrane transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02321
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0015562 efflux transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02321
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF02321 Outer membrane efflux protein IPR003423 Outer membrane efflux protein 34 219 3.1E-11
Coils Coil Coil - - 250 270 -
PANTHER PTHR30026 OUTER MEMBRANE PROTEIN TOLC - - 13 414 1.2E-22
Gene3D G3DSA:1.20.1600.10 Outer membrane efflux proteins (OEP) - - 35 416 4.5E-49
Pfam PF02321 Outer membrane efflux protein IPR003423 Outer membrane efflux protein 240 414 8.5E-22
Coils Coil Coil - - 330 357 -
Coils Coil Coil - - 111 138 -
SUPERFAMILY SSF56954 Outer membrane efflux proteins (OEP) - - 6 414 1.19E-55
Coils Coil Coil - - 186 213 -

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.