Pseudomonas mendocina NK-01, MDS_2513

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0043565	sequence-specific DNA binding	ISM Inferred from Sequence Model Term mapped from: InterPro:SM00342	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003700	DNA-binding transcription factor activity	ISM Inferred from Sequence Model Term mapped from: InterPro:SM00342	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006355	regulation of transcription, DNA-templated	ISM Inferred from Sequence Model Term mapped from: InterPro:SM00342	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Pfam	PF01965	DJ-1/PfpI family	IPR002818	DJ-1/PfpI	43	197	7.9E-14
Gene3D	G3DSA:3.40.50.880	-	IPR029062	Class I glutamine amidotransferase-like	25	224	7.3E-39
SMART	SM00342	aracneu4	IPR018060	DNA binding HTH domain, AraC-type	249	332	8.7E-25
CDD	cd03136	GATase1_AraC_ArgR_like	-	-	31	216	8.81077E-55
SUPERFAMILY	SSF52317	Class I glutamine amidotransferase-like	IPR029062	Class I glutamine amidotransferase-like	30	215	5.0E-30
Gene3D	G3DSA:1.10.10.60	-	-	-	229	334	5.2E-26
SUPERFAMILY	SSF46689	Homeodomain-like	IPR009057	Homeobox-like domain superfamily	285	332	2.24E-9
Pfam	PF12833	Helix-turn-helix domain	IPR018060	DNA binding HTH domain, AraC-type	255	330	3.6E-20
PANTHER	PTHR43130	ARAC-FAMILY TRANSCRIPTIONAL REGULATOR	-	-	27	272	5.7E-28
SUPERFAMILY	SSF46689	Homeodomain-like	IPR009057	Homeobox-like domain superfamily	233	283	8.96E-8

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.