Pseudomonas mendocina NK-01, MDS_2516

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in GBrowse

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04675
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003910 DNA ligase (ATP) activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01068
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01068
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006310 DNA recombination
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01068
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01068
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pmk03030 DNA replication 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pmk03420 Nucleotide excision repair 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pmk03430 Mismatch repair 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pmk03410 Base excision repair 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd07897 Adenylation_DNA_ligase_Bac1 - - 207 426 2.69706E-116
TIGRFAM TIGR04120 DNA_lig_bact: DNA ligase, ATP-dependent, PP_1105 family IPR026333 ATP-dependent DNA ligase, PP_1105 family 2 552 0.0
SUPERFAMILY SSF56091 DNA ligase/mRNA capping enzyme, catalytic domain - - 208 422 2.3E-56
PANTHER PTHR45674 DNA LIGASE 1/3 FAMILY MEMBER - - 3 551 9.5E-70
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 426 552 2.5E-29
PANTHER PTHR45674:SF9 DNA LIGASE 3 - - 3 551 9.5E-70
Pfam PF04675 DNA ligase N terminus IPR012308 DNA ligase, ATP-dependent, N-terminal 2 161 7.8E-15
Gene3D G3DSA:1.10.3260.10 - IPR036599 DNA ligase, ATP-dependent, N-terminal domain superfamily 2 183 6.4E-11
SUPERFAMILY SSF50249 Nucleic acid-binding proteins IPR012340 Nucleic acid-binding, OB-fold 427 551 1.13E-29
Pfam PF01068 ATP dependent DNA ligase domain IPR012310 DNA ligase, ATP-dependent, central 231 422 7.7E-27
CDD cd07972 OBF_DNA_ligase_Arch_LigB - - 427 550 1.7233E-60
Gene3D G3DSA:3.30.470.30 DNA ligase/mRNA capping enzyme - - 209 422 1.4E-45
Pfam PF04679 ATP dependent DNA ligase C terminal region IPR012309 DNA ligase, ATP-dependent, C-terminal 443 537 1.0E-9

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.