Pseudomonas mendocina NK-01, MDS_2668

Gene Feature Overview

Strain	Pseudomonas mendocina NK-01 GCF_000204295.1|latest
Locus Tag	MDS_2668
Name
Replicon	chromosome
Genomic location	2921278 - 2921961 (+ strand)

Cross-References

RefSeq	YP_004380451.1
GI	330503582
Entrez	10457450
INSDC	AEB58699.1
NCBI Locus Tag	MDS_2668
UniParc	UPI000206DE7C
UniProtKB Acc	F4DWK0
UniProtKB ID	F4DWK0_PSEMN
UniRef100	UniRef100_F4DWK0
UniRef50	UniRef50_P0A9T9
UniRef90	UniRef90_A4XVE9

Product

Feature Type	CDS
Coding Frame	1
Product Name	ABC transporter
Synonyms
Evidence for Translation
Charge (pH 7)	-8.86
Kyte-Doolittle Hydrophobicity Value	-0.123
Molecular Weight (kDa)	24659.6
Isoelectric Point (pI)	5.13

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 669 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG002712 (535 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: MDS_2668 Search term: ABC transporter

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000478255 ATP binding cassette subfamily B member 1 [Source:HGNC Symbol;Acc:HGNC:40] E-value: 5.8e-16 Percent Identity: 30.0
Ensembl 110, assembly GRCh38.p14	ENSP00000265724 ATP binding cassette subfamily B member 1 [Source:HGNC Symbol;Acc:HGNC:40] E-value: 5.8e-16 Percent Identity: 30.0
Ensembl 110, assembly GRCh38.p14	ENSP00000444095 ATP binding cassette subfamily B member 1 [Source:HGNC Symbol;Acc:HGNC:40] E-value: 5.8e-16 Percent Identity: 30.0

References