Pseudomonas mendocina NK-01, MDS_3169

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd01347 ligand_gated_channel - - 48 769 1.55169E-61
SUPERFAMILY SSF56935 Porins - - 23 770 3.14E-117
Gene3D G3DSA:2.40.170.20 - IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily 35 770 0.0
PANTHER PTHR32552 FERRICHROME IRON RECEPTOR-RELATED IPR039426 TonB-dependent receptor-like 31 770 3.6E-117
Pfam PF00593 TonB dependent receptor IPR000531 TonB-dependent receptor-like, beta-barrel 277 768 3.5E-48
Pfam PF07715 TonB-dependent Receptor Plug Domain IPR012910 TonB-dependent receptor, plug domain 42 149 2.7E-15

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.