Pseudomonas mendocina NK-01, MDS_3738

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0004642 phosphoribosylformylglycinamidine synthase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01735
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006189 'de novo' IMP biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01735
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
MetaCyc 5-aminoimidazole ribonucleotide biosynthesis I InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
KEGG pmk01130 Biosynthesis of antibiotics 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pmk01110 Biosynthesis of secondary metabolites 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
MetaCyc 5-aminoimidazole ribonucleotide biosynthesis II InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
KEGG pmk01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
MetaCyc superpathway of 5-aminoimidazole ribonucleotide biosynthesis InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
KEGG pmk00230 Purine metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF55326 PurM N-terminal domain-like IPR036921 PurM-like, N-terminal domain superfamily 219 426 2.2E-64
FunFam G3DSA:1.10.8.750:FF:000002 Phosphoribosylformylglycinamidine synthase - - 151 211 2.7E-29
Gene3D G3DSA:3.30.1330.10 - IPR036921 PurM-like, N-terminal domain superfamily 212 418 4.0E-44
NCBIfam TIGR01735 JCVI: phosphoribosylformylglycinamidine synthase IPR010073 Phosphoribosylformylglycinamidine synthase PurL 3 1297 0.0
CDD cd01740 GATase1_FGAR_AT - - 1045 1294 4.69932E-90
FunFam G3DSA:3.30.1330.10:FF:000002 Phosphoribosylformylglycinamidine synthase - - 212 418 5.4E-116
Coils Coil Coil - - 995 1015 -
SUPERFAMILY SSF56042 PurM C-terminal domain-like IPR036676 PurM-like, C-terminal domain superfamily 824 1036 2.54E-51
SUPERFAMILY SSF56042 PurM C-terminal domain-like IPR036676 PurM-like, C-terminal domain superfamily 430 612 5.53E-54
Pfam PF13507 CobB/CobQ-like glutamine amidotransferase domain - - 1042 1297 1.6E-108
MobiDBLite mobidb-lite consensus disorder prediction - - 301 327 -
Pfam PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal IPR040707 Phosphoribosylformylglycinamidine synthase, N-terminal 35 148 1.0E-39
FunFam G3DSA:3.90.650.10:FF:000005 Phosphoribosylformylglycinamidine synthase - - 807 983 5.5E-69
Hamap MF_00419 Phosphoribosylformylglycinamidine synthase [purL]. IPR010073 Phosphoribosylformylglycinamidine synthase PurL 1 1298 21.375023
Pfam PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain IPR041609 Phosphoribosylformylglycinamidine synthase, linker domain 169 218 1.8E-23
FunFam G3DSA:3.30.1330.10:FF:000005 Phosphoribosylformylglycinamidine synthase - - 617 805 6.2E-98
SUPERFAMILY SSF109736 FGAM synthase PurL, linker domain - - 153 218 1.96E-21
CDD cd02204 PurL_repeat2 - - 677 960 1.74888E-78
SUPERFAMILY SSF82697 PurS-like IPR036604 Phosphoribosylformylglycinamidine synthase subunit PurS-like superfamily 1 150 9.94E-47
CDD cd02203 PurL_repeat1 - - 203 598 0.0
SUPERFAMILY SSF52317 Class I glutamine amidotransferase-like IPR029062 Class I glutamine amidotransferase-like 1039 1297 1.38E-95
Pfam PF02769 AIR synthase related protein, C-terminal domain IPR010918 PurM-like, C-terminal domain 430 587 2.6E-30
Gene3D G3DSA:1.10.8.750 Phosphoribosylformylglycinamidine synthase, linker domain - - 151 211 8.2E-28
FunFam G3DSA:3.40.50.880:FF:000008 Phosphoribosylformylglycinamidine synthase - - 984 1298 0.0
Gene3D G3DSA:3.90.650.10 - IPR036676 PurM-like, C-terminal domain superfamily 419 604 2.7E-53
Gene3D G3DSA:3.90.650.10 - IPR036676 PurM-like, C-terminal domain superfamily 809 983 2.8E-27
Pfam PF02769 AIR synthase related protein, C-terminal domain IPR010918 PurM-like, C-terminal domain 839 969 2.8E-15
Gene3D G3DSA:3.30.1330.10 - IPR036921 PurM-like, N-terminal domain superfamily 613 807 6.3E-24
FunFam G3DSA:3.90.650.10:FF:000002 Phosphoribosylformylglycinamidine synthase - - 419 604 6.6E-102
Gene3D G3DSA:3.40.50.880 - IPR029062 Class I glutamine amidotransferase-like 984 1298 0.0
PANTHER PTHR10099 PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE - - 2 1297 0.0
SUPERFAMILY SSF55326 PurM N-terminal domain-like IPR036921 PurM-like, N-terminal domain superfamily 622 814 4.97E-68
SMART SM01211 GATase_5_2 - - 1042 1297 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.