Pseudomonas mendocina NK-01, MDS_3739

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_02016
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.40.190.10 - - - 18 241 1.4E-79
MobiDBLite mobidb-lite consensus disorder prediction - - 446 466 -
Pfam PF01464 Transglycosylase SLT domain IPR008258 Transglycosylase SLT domain 1 272 379 4.8E-23
Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF 23 246 1.2E-32
SUPERFAMILY SSF53955 Lysozyme-like IPR023346 Lysozyme-like domain superfamily 226 429 2.53E-35
CDD cd01009 PBP2_YfhD_N - - 21 245 5.01052E-92
Hamap MF_02016 Membrane-bound lytic murein transglycosylase F [mltF]. IPR023703 Membrane-bound lytic murein transglycosylase F 1 450 44.383514
MobiDBLite mobidb-lite consensus disorder prediction - - 451 466 -
Gene3D G3DSA:1.10.530.10 - - - 252 434 4.8E-39
CDD cd13403 MLTF-like - - 273 433 1.49116E-87
SMART SM00062 AABind_6 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF 22 247 2.8E-35
PANTHER PTHR35936 MEMBRANE-BOUND LYTIC MUREIN TRANSGLYCOSYLASE F - - 263 380 3.6E-46
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 23 246 1.94E-38
Gene3D G3DSA:3.40.190.10 - - - 108 203 1.4E-79

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.