Pseudomonas mendocina NK-01, MDS_3750

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0009279 cell outer membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01783
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0015891 siderophore transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01783
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0038023 signaling receptor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01783
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0015344 siderophore uptake transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01783
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR32552:SF85 BLL7968 PROTEIN - - 45 709 0.0
Gene3D G3DSA:2.40.170.20 - IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily 174 709 7.5E-107
Gene3D G3DSA:2.170.130.10 - IPR037066 TonB-dependent receptor, plug domain superfamily 46 173 1.1E-26
TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor IPR010105 TonB-dependent siderophore receptor 68 709 8.6E-105
MobiDBLite mobidb-lite consensus disorder prediction - - 497 518 -
SUPERFAMILY SSF56935 Porins - - 56 709 7.12E-121
PANTHER PTHR32552 FERRICHROME IRON RECEPTOR-RELATED IPR039423 TonB-dependent receptor-like 45 709 0.0
Pfam PF00593 TonB dependent receptor IPR000531 TonB-dependent receptor-like, beta-barrel 234 707 1.7E-60
Pfam PF07715 TonB-dependent Receptor Plug Domain IPR012910 TonB-dependent receptor, plug domain 64 161 5.2E-16
CDD cd01347 ligand_gated_channel - - 70 709 2.16488E-87

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.