Pseudomonas mendocina NK-01, MDS_3753

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 59 70 5.1E-7
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 109 308 4.34E-25
CDD cd05466 PBP2_LTTR_substrate - - 135 306 4.01557E-14
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 107 308 3.5E-25
PANTHER PTHR30126:SF29 LYSR FAMILY TRANSCRIPTIONAL REGULATOR-RELATED - - 19 308 4.0E-86
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 49 59 5.1E-7
Gene3D G3DSA:3.40.190.290 - - - 112 318 3.7E-24
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 38 49 5.1E-7
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 23 81 6.6E-19
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 22 107 1.17E-19
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 17 102 1.2E-22
PANTHER PTHR30126 HTH-TYPE TRANSCRIPTIONAL REGULATOR - - 19 308 4.0E-86

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.