Pseudomonas mendocina NK-01, MDS_3756

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR30414
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0055085 transmembrane transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00924
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0071470 cellular response to osmotic stress
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR30414
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008381 mechanosensitive ion channel activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR30414
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:2.30.30.60 - IPR023408 Mechanosensitive ion channel MscS, beta-domain superfamily 200 250 1.7E-8
Coils Coil Coil - - 293 313 -
SUPERFAMILY SSF50182 Sm-like ribonucleoproteins IPR010920 LSM domain superfamily 183 250 1.73E-11
Pfam PF00924 Mechanosensitive ion channel IPR006685 Mechanosensitive ion channel MscS 140 395 3.5E-48
PANTHER PTHR30414 UNCHARACTERIZED IPR030192 Miniconductance mechanosensitive channel YbdG 3 410 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.