Pseudomonas mendocina NK-01, MDS_3766

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:1.10.260.40
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR34475 - - - 8 329 1.9E-64
SMART SM00530 mbf_short4 IPR001387 Cro/C1-type helix-turn-helix domain 19 75 3.6E-4
Pfam PF13413 Helix-turn-helix domain - - 20 79 1.4E-21
Gene3D G3DSA:1.10.260.40 - IPR010982 Lambda repressor-like, DNA-binding domain superfamily 6 106 1.2E-24
SUPERFAMILY SSF47413 lambda repressor-like DNA-binding domains IPR010982 Lambda repressor-like, DNA-binding domain superfamily 15 83 4.64E-7
Pfam PF13464 Domain of unknown function (DUF4115) IPR025194 Domain of unknown function DUF4115 256 329 2.4E-23
CDD cd00093 HTH_XRE IPR001387 Cro/C1-type helix-turn-helix domain 17 76 2.41961E-6
MobiDBLite mobidb-lite consensus disorder prediction - - 175 248 -

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.