Pseudomonas mendocina NK-01, MDS_3767
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0005515 | protein binding |
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:1.25.40.10
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ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Pfam | PF13181 | Tetratricopeptide repeat | IPR019734 | Tetratricopeptide repeat | 38 | 69 | 0.0068 |
| SMART | SM00028 | tpr_5 | IPR019734 | Tetratricopeptide repeat | 71 | 104 | 0.23 |
| PANTHER | PTHR44186 | - | - | - | 34 | 230 | 1.2E-18 |
| SUPERFAMILY | SSF48452 | TPR-like | IPR011990 | Tetratricopeptide-like helical domain superfamily | 38 | 234 | 1.21E-23 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | IPR011990 | Tetratricopeptide-like helical domain superfamily | 32 | 251 | 6.2E-57 |
| Pfam | PF13424 | Tetratricopeptide repeat | - | - | 105 | 170 | 8.4E-8 |
| SMART | SM00028 | tpr_5 | IPR019734 | Tetratricopeptide repeat | 175 | 208 | 63.0 |
| SMART | SM00028 | tpr_5 | IPR019734 | Tetratricopeptide repeat | 37 | 70 | 0.018 |
| SMART | SM00028 | tpr_5 | IPR019734 | Tetratricopeptide repeat | 141 | 174 | 0.0048 |
| SMART | SM00028 | tpr_5 | IPR019734 | Tetratricopeptide repeat | 105 | 140 | 420.0 |
| NCBIfam | TIGR02521 | JCVI: type IV pilus biogenesis/stability protein PilW | IPR013360 | Pilus biogenesis/stability type IV, PilW | 8 | 240 | 5.5E-75 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.