Pseudomonas mendocina NK-01, MDS_4034

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0055085 transmembrane transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02321
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0022857 transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01845
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0015562 efflux transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02321
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01845
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pmk02024 Quorum sensing 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pmk01501 beta-Lactam resistance 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF02321 Outer membrane efflux protein IPR003423 Outer membrane efflux protein 66 256 4.7E-28
NCBIfam TIGR01845 JCVI: efflux transporter outer membrane subunit IPR010131 RND efflux system, outer membrane lipoprotein, NodT 9 466 0.0
PANTHER PTHR30203 OUTER MEMBRANE CATION EFFLUX PROTEIN - - 4 469 8.1E-110
Gene3D G3DSA:1.20.1600.10 Outer membrane efflux proteins (OEP) - - 57 466 0.0
SUPERFAMILY SSF56954 Outer membrane efflux proteins (OEP) - - 2 469 1.22E-118
Pfam PF02321 Outer membrane efflux protein IPR003423 Outer membrane efflux protein 282 464 1.1E-29
Gene3D G3DSA:2.20.200.10 Outer membrane efflux proteins (OEP) - - 103 355 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.