Pseudomonas mendocina NK-01, MDS_4141

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0000160 phosphorelay signal transduction system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00448
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pmk02020 Two-component system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pmk02025 Biofilm formation - Pseudomonas aeruginosa 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 156 336 1.9E-59
SMART SM00448 REC_2 IPR001789 Signal transduction response regulator, receiver domain 19 133 8.1E-23
FunFam G3DSA:3.30.70.270:FF:000001 Diguanylate cyclase domain protein - - 166 336 1.2E-51
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 21 133 5.7E-20
SMART SM00267 duf1_3 IPR000160 GGDEF domain 157 336 3.0E-57
SUPERFAMILY SSF52172 CheY-like IPR011006 CheY-like superfamily 17 148 3.42E-30
PANTHER PTHR45138 REGULATORY COMPONENTS OF SENSORY TRANSDUCTION SYSTEM - - 67 338 1.7E-71
CDD cd01949 GGDEF IPR000160 GGDEF domain 174 334 6.42956E-64
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 173 332 1.2E-48
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 176 334 6.83E-48
Gene3D G3DSA:3.40.50.2300 - - - 15 155 1.6E-31
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 168 334 3.2E-50

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.