Pseudomonas mendocina NK-01, MDS_4399
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Gene3D | G3DSA:3.30.70.270 | - | IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | 233 | 415 | 1.6E-50 |
| Pfam | PF00990 | Diguanylate cyclase, GGDEF domain | IPR000160 | GGDEF domain | 369 | 410 | 2.7E-7 |
| SMART | SM00267 | duf1_3 | IPR000160 | GGDEF domain | 232 | 415 | 3.1E-43 |
| SUPERFAMILY | SSF55073 | Nucleotide cyclase | IPR029787 | Nucleotide cyclase | 247 | 415 | 4.94E-38 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 347 | 366 | - |
| Pfam | PF00990 | Diguanylate cyclase, GGDEF domain | IPR000160 | GGDEF domain | 242 | 350 | 4.5E-23 |
| FunFam | G3DSA:3.30.70.270:FF:000001 | Diguanylate cyclase domain protein | - | - | 237 | 416 | 6.0E-40 |
| PANTHER | PTHR45138 | REGULATORY COMPONENTS OF SENSORY TRANSDUCTION SYSTEM | - | - | 183 | 416 | 2.8E-59 |
| NCBIfam | TIGR00254 | JCVI: diguanylate cyclase (GGDEF) domain | IPR000160 | GGDEF domain | 240 | 350 | 1.3E-25 |
| Coils | Coil | Coil | - | - | 333 | 353 | - |
| CDD | cd01949 | GGDEF | IPR000160 | GGDEF domain | 243 | 413 | 1.60915E-51 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 347 | 391 | - |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.