Pseudomonas mendocina NK-01, MDS_4533

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00260
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006935 chemotaxis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR22617
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pmk02030 Bacterial chemotaxis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pmk02020 Two-component system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd00732 CheW - - 11 152 7.02203E-48
Pfam PF01584 CheW-like domain IPR002545 CheW-like domain 11 151 2.3E-37
SUPERFAMILY SSF50341 CheW-like IPR036061 CheW-like domain superfamily 7 153 1.12E-38
Gene3D G3DSA:2.30.30.40 SH3 Domains - - 13 142 4.1E-41
Gene3D G3DSA:2.40.50.180 - - - 30 143 4.1E-41
PANTHER PTHR22617 CHEMOTAXIS SENSOR HISTIDINE KINASE-RELATED IPR039315 Chemotaxis protein CheW 5 159 8.0E-41
SMART SM00260 chew_2 IPR002545 CheW-like domain 7 148 9.3E-37

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.