Pseudomonas mendocina NK-01, MDS_4751

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003774 motor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00956
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0071973 bacterial-type flagellum-dependent cell motility
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02480
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0009425 bacterial-type flagellum basal body
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00956
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0009288 bacterial-type flagellum
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02480
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006935 chemotaxis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02480
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02480
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pmk02040 Flagellar assembly 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pmk02030 Bacterial chemotaxis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF101801 Surface presentation of antigens (SPOA) IPR036429 SpoA-like superfamily 42 115 5.89E-21
NCBIfam TIGR02480 JCVI: flagellar motor switch protein FliN IPR012826 Flagellar motor switch FliN 42 114 4.0E-27
PRINTS PR00956 Flagellar motor switch protein FliN signature IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb 44 60 9.5E-19
MobiDBLite mobidb-lite consensus disorder prediction - - 1 38 -
PRINTS PR00956 Flagellar motor switch protein FliN signature IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb 61 77 9.5E-19
Gene3D G3DSA:2.30.330.10 - IPR036429 SpoA-like superfamily 31 117 8.8E-24
MobiDBLite mobidb-lite consensus disorder prediction - - 19 38 -
PANTHER PTHR43484 - - - 39 114 3.0E-20
PRINTS PR00956 Flagellar motor switch protein FliN signature IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb 90 105 9.5E-19
Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term IPR001543 Flagellar motor switch protein FliN-like, C-terminal domain 47 113 1.7E-21
PRINTS PR00956 Flagellar motor switch protein FliN signature IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb 77 90 9.5E-19

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.