Pseudomonas mendocina NK-01, MDS_4760

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.40.190.10 - - - 99 288 2.2E-48
FunFam G3DSA:3.40.190.10:FF:000017 Glycine cleavage system transcriptional activator - - 164 260 7.1E-25
FunFam G3DSA:1.10.10.10:FF:000038 Glycine cleavage system transcriptional activator - - 6 89 1.3E-28
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 10 66 6.2E-18
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 23 34 1.0E-7
CDD cd08481 PBP2_GcdR_like - - 95 288 1.93882E-96
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 5 85 1.0E-19
Gene3D G3DSA:3.40.190.10 - - - 164 260 2.2E-48
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 4 81 1.36E-19
PANTHER PTHR30537 HTH-TYPE TRANSCRIPTIONAL REGULATOR - - 9 292 7.6E-65
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 44 55 1.0E-7
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 93 289 1.2E-35
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 34 44 1.0E-7
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 95 294 6.15E-36

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.