Pseudomonas mendocina NK-01, MDS_4808

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0019898 extrinsic component of membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:6.10.140.1990
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0055085 transmembrane transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01730
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:1990961 xenobiotic detoxification by transmembrane export across the plasma membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:6.10.140.1990
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0022857 transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01730
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:1990195 macrolide transmembrane transporter complex
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:6.10.140.1990
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01730
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF111369 HlyD-like secretion proteins - - 53 241 2.09E-19
Gene3D G3DSA:6.10.140.1990 - IPR030190 Macrolide export protein MacA, alpha-hairpin domain superfamily 96 182 1.1E-11
Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain 50 264 2.8E-15
PANTHER PTHR30469 MULTIDRUG RESISTANCE PROTEIN MDTA - - 10 378 1.7E-78
Coils Coil Coil - - 146 180 -
Coils Coil Coil - - 108 128 -
NCBIfam TIGR01730 JCVI: efflux RND transporter periplasmic adaptor subunit IPR006143 RND efflux pump, membrane fusion protein 41 375 1.2E-48
Gene3D G3DSA:2.40.420.20 - - - 314 385 2.0E-11
Gene3D G3DSA:2.40.30.170 - - - 218 313 3.7E-26
Gene3D G3DSA:2.40.50.100 - - - 60 217 2.0E-21

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.