Pseudomonas mendocina NK-01, MDS_4822

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0008948 oxaloacetate decarboxylase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01108
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00682
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006814 sodium ion transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01108
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pmk01200 Carbon metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pmk00620 Pyruvate metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pmk01120 Microbial metabolism in diverse environments 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pmk01230 Biosynthesis of amino acids 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pmk00020 Citrate cycle (TCA cycle) 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pmk01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00364 Biotin-requiring enzyme IPR000089 Biotin/lipoyl attachment 536 601 2.4E-18
Pfam PF02436 Conserved carboxylase domain IPR003379 Carboxylase, conserved domain 292 484 1.7E-56
Gene3D G3DSA:2.40.50.100 - - - 526 602 8.8E-26
SUPERFAMILY SSF89000 post-HMGL domain-like - - 297 447 5.49E-51
CDD cd07937 DRE_TIM_PC_TC_5S - - 7 281 0.0
SUPERFAMILY SSF51230 Single hybrid motif IPR011053 Single hybrid motif 531 602 9.55E-22
FunFam G3DSA:2.40.50.100:FF:000003 Acetyl-CoA carboxylase biotin carboxyl carrier protein - - 527 602 8.8E-25
CDD cd06850 biotinyl_domain - - 536 601 2.66949E-28
SUPERFAMILY SSF51569 Aldolase - - 1 300 2.93E-92
Pfam PF00682 HMGL-like IPR000891 Pyruvate carboxyltransferase 5 268 6.8E-52
Gene3D G3DSA:3.20.20.70 Aldolase class I IPR013785 Aldolase-type TIM barrel 1 456 0.0
NCBIfam TIGR01108 JCVI: sodium-extruding oxaloacetate decarboxylase subunit alpha IPR005776 Oxaloacetate decarboxylase, alpha subunit 7 598 0.0
PANTHER PTHR45266 OXALOACETATE DECARBOXYLASE ALPHA CHAIN - - 7 602 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.