Pseudomonas mendocina NK-01, MDS_4822

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.20.20.70
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008948 oxaloacetate decarboxylase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01108
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006814 sodium ion transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01108
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pmk01230 Biosynthesis of amino acids 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pmk01200 Carbon metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pmk01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pmk01120 Microbial metabolism in diverse environments 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pmk00620 Pyruvate metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pmk00020 Citrate cycle (TCA cycle) 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF51569 1 300 2.93E-92
CDD cd06850 biotinyl_domain 536 601 2.20321E-28
TIGRFAM TIGR01108 oadA: oxaloacetate decarboxylase alpha subunit IPR005776 Oxaloacetate decarboxylase, alpha subunit 7 598 0.0
CDD cd07937 DRE_TIM_PC_TC_5S 7 281 0.0
Gene3D G3DSA:2.40.50.100 526 602 1.4E-25
ProSiteProfiles PS50968 Biotinyl/lipoyl domain profile. IPR000089 Biotin/lipoyl attachment 527 602 29.359
ProSiteProfiles PS50991 Pyruvate carboxyltransferase domain. IPR000891 Pyruvate carboxyltransferase 5 265 36.972
SUPERFAMILY SSF89000 297 447 5.49E-51
Pfam PF00682 HMGL-like IPR000891 Pyruvate carboxyltransferase 5 268 6.0E-52
SUPERFAMILY SSF51230 IPR011053 Single hybrid motif 531 602 9.55E-22
Pfam PF02436 Conserved carboxylase domain IPR003379 Carboxylase, conserved domain 292 484 3.3E-57
Gene3D G3DSA:3.20.20.70 IPR013785 Aldolase-type TIM barrel 1 456 0.0
Pfam PF00364 Biotin-requiring enzyme IPR000089 Biotin/lipoyl attachment 536 601 3.6E-18

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.