Pseudomonas mendocina NK-01, MDS_4823

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02786
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0046872 metal ion binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS50975
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pmk00020 Citrate cycle (TCA cycle) 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pmk01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pmk01200 Carbon metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pmk01120 Microbial metabolism in diverse environments 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pmk01230 Biosynthesis of amino acids 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pmk00620 Pyruvate metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF52440 IPR016185 Pre-ATP-grasp domain superfamily 1 112 2.09E-45
Pfam PF00289 Biotin carboxylase, N-terminal domain IPR005481 Biotin carboxylase-like, N-terminal domain 1 109 5.1E-43
Pfam PF02785 Biotin carboxylase C-terminal domain IPR005482 Biotin carboxylase, C-terminal 334 440 2.1E-40
Gene3D G3DSA:3.30.470.130 1 448 0.0
ProSiteProfiles PS50979 Biotin carboxylation domain profile. IPR011764 Biotin carboxylation domain 1 444 53.566
Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain 114 320 9.2E-73
ProSiteProfiles PS50975 ATP-grasp fold profile. IPR011761 ATP-grasp fold 119 315 45.765
ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain 284 291 -
SUPERFAMILY SSF56059 82 346 1.5E-66
ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain 152 166 -
SUPERFAMILY SSF51246 IPR011054 Rudiment single hybrid motif 329 445 1.73E-42
SMART SM00878 IPR005482 Biotin carboxylase, C-terminal 334 440 1.3E-59

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.