Pseudomonas syringae pv. tomato DC3000, PSPTO_0478

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_0478
NCBI Old Locus Tag	PSPTO0478
Name	Synonym: PSPTO0478
Replicon	chromosome
Genomic location	523823 - 524749 (- strand)

Cross-References

RefSeq	NP_790327.1
GI	28867708
Entrez	1182087
INSDC	AAO54022.1
NCBI Locus Tag	PSPTO_0478
NCBI Old Locus Tag	PSPTO0478
UniParc	UPI0000008458
UniProtKB Acc	Q88AB4
UniProtKB ID	Q88AB4_PSESM
UniRef100	UniRef100_Q88AB4
UniRef50	UniRef50_Q88AB4
UniRef90	UniRef90_Q88AB4

Product

Feature Type	CDS
Coding Frame	1
Product Name	hypothetical protein
Synonyms
Evidence for Translation
Charge (pH 7)	-3.62
Kyte-Doolittle Hydrophobicity Value	-0.343
Molecular Weight (kDa)	34.9
Isoelectric Point (pI)	5.98

Subcellular localization

Individual Mappings	Localization Confidence PMID Unknown Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 13 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG017274 (21 members)
Putative Inparalogs	1 predicted inparalogs hypothetical protein (PSPTO_3775) 90.3% identity

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_0478

Human Homologs

References