Pseudomonas syringae pv. tomato DC3000, PSPTO_0488

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_0488
NCBI Old Locus Tag	PSPTO0488
Name	Synonym: PSPTO0488
Replicon	chromosome
Genomic location	534434 - 535228 (+ strand)

Cross-References

RefSeq	NP_790337.1
GI	28867718
Entrez	1182097
INSDC	AAO54032.1
NCBI Locus Tag	PSPTO_0488
NCBI Old Locus Tag	PSPTO0488
UniParc	UPI0000008462
UniProtKB Acc	Q88AA4
UniProtKB ID	Q88AA4_PSESM
UniRef100	UniRef100_Q88AA4
UniRef50	UniRef50_D8IYF9
UniRef90	UniRef90_Q88AA4

Product

Feature Type	CDS
Coding Frame	1
Product Name	ABC transporter permease
Synonyms
Evidence for Translation
Charge (pH 7)	8.31
Kyte-Doolittle Hydrophobicity Value	0.966
Molecular Weight (kDa)	28.7
Isoelectric Point (pI)	9.80

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 529 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG017280 (57 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_0488 Search term: ABC transporter permease

Human Homologs

References