Pseudomonas syringae pv. tomato DC3000, PSPTO_0489

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_0489
NCBI Old Locus Tag	PSPTO0489
Name	Synonym: PSPTO0489
Replicon	chromosome
Genomic location	535225 - 536268 (+ strand)

Cross-References

RefSeq	NP_790338.1
GI	28867719
Entrez	1182098
INSDC	AAO54033.1
NCBI Locus Tag	PSPTO_0489
NCBI Old Locus Tag	PSPTO0489
UniParc	UPI0000008463
UniProtKB Acc	Q88AA3
UniProtKB ID	Q88AA3_PSESM
UniRef100	UniRef100_Q88AA3
UniRef50	UniRef50_U1H6L5
UniRef90	UniRef90_D7I614

Product

Feature Type	CDS
Coding Frame	1
Product Name	ABC transporter ATP-binding protein
Synonyms
Evidence for Translation
Charge (pH 7)	0.74
Kyte-Doolittle Hydrophobicity Value	-0.015
Molecular Weight (kDa)	37.4
Isoelectric Point (pI)	7.21

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 669 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG016906 (158 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_0489 Search term: ABC transporter ATP-binding protein

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000258738 ATP binding cassette subfamily B member 5 [Source:HGNC Symbol;Acc:HGNC:46] E-value: 8.9e-24 Percent Identity: 36.3
Ensembl 110, assembly GRCh38.p14	ENSP00000384881 ATP binding cassette subfamily B member 5 [Source:HGNC Symbol;Acc:HGNC:46] E-value: 8.9e-24 Percent Identity: 36.3

References