Pseudomonas syringae pv. tomato DC3000, PSPTO_2349

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_2349
NCBI Old Locus Tag	PSPTO2349
Name	Synonym: PSPTO2349
Replicon	chromosome
Genomic location	2604859 - 2605749 (+ strand)

Cross-References

RefSeq	YP_001740051.1
GI	170660221
Entrez	1184000
INSDC	ACB22027.1
NCBI Locus Tag	PSPTO_2349
NCBI Old Locus Tag	PSPTO2349
UniParc	UPI000170CD81
UniProtKB Acc	B1GRK0
UniProtKB ID	B1GRK0_PSESM
UniRef100	UniRef100_B1GRK0
UniRef50	UniRef50_Q4K8W8
UniRef90	UniRef90_B1GRK0

Product

Feature Type	CDS
Coding Frame	1
Product Name	RNA pseudouridine synthase family protein
Synonyms
Evidence for Translation
Charge (pH 7)	-0.23
Kyte-Doolittle Hydrophobicity Value	-0.339
Molecular Weight (kDa)	33.8
Isoelectric Point (pI)	6.96

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 560 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG003402 (526 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_2349 Search term: RNA pseudouridine synthase family protein

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000453036 RNA pseudouridine synthase domain containing 2 [Source:HGNC Symbol;Acc:HGNC:24180] E-value: 3.2e-14 Percent Identity: 29.6
Ensembl 110, assembly GRCh38.p14	ENSP00000323288 RNA pseudouridine synthase domain containing 2 [Source:HGNC Symbol;Acc:HGNC:24180] E-value: 3.2e-14 Percent Identity: 29.6

References