Pseudomonas syringae pv. tomato DC3000, PSPTO_2712

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0016772 transferase activity, transferring phosphorus-containing groups
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00344
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0016310 phosphorylation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00344
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00065
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF47384
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0000160 phosphorelay signal transduction system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00072
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0000155 phosphorelay sensor kinase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF47384
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 663 673 2.8E-16
SMART SM00448 REC_2 IPR001789 Signal transduction response regulator, receiver domain 900 1014 3.0E-12
Gene3D G3DSA:3.40.50.2300 - - - 1046 1169 1.6E-43
Gene3D G3DSA:3.30.450.40 - IPR029016 GAF-like domain superfamily 228 399 1.6E-23
Coils Coil Coil - - 389 490 -
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 645 659 2.8E-16
SUPERFAMILY SSF47384 Homodimeric domain of signal transducing histidine kinase IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily 479 562 1.88E-20
Gene3D G3DSA:1.10.287.130 - - - 460 559 4.1E-25
SUPERFAMILY SSF52172 CheY-like IPR011006 CheY-like superfamily 1045 1165 4.7E-38
Pfam PF05227 CHASE3 domain IPR007891 CHASE3 45 179 5.8E-33
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 780 886 6.9E-14
SUPERFAMILY SSF55781 GAF domain-like - - 221 388 8.51E-26
Gene3D G3DSA:3.30.565.10 - IPR036890 Histidine kinase/HSP90-like ATPase superfamily 560 723 4.2E-47
Pfam PF13185 GAF domain IPR003018 GAF domain 253 388 5.8E-16
CDD cd00082 HisKA IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain 494 557 5.78172E-13
FunFam G3DSA:3.30.565.10:FF:000010 Sensor histidine kinase RcsC - - 560 722 3.2E-47
SMART SM00448 REC_2 IPR001789 Signal transduction response regulator, receiver domain 778 888 4.0E-16
CDD cd00156 REC - - 903 994 8.90167E-14
SUPERFAMILY SSF52172 CheY-like IPR011006 CheY-like superfamily 900 1026 1.57E-18
SMART SM00387 HKATPase_4 IPR003594 Histidine kinase/HSP90-like ATPase 608 720 7.7E-37
Gene3D G3DSA:3.40.50.2300 - - - 780 896 2.7E-22
MobiDBLite mobidb-lite consensus disorder prediction - - 438 458 -
SMART SM00448 REC_2 IPR001789 Signal transduction response regulator, receiver domain 1046 1160 4.5E-38
SUPERFAMILY SSF55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase IPR036890 Histidine kinase/HSP90-like ATPase superfamily 550 722 3.27E-46
Coils Coil Coil - - 881 901 -
PANTHER PTHR45339 HYBRID SIGNAL TRANSDUCTION HISTIDINE KINASE J - - 334 958 0.0
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 902 1010 3.5E-14
SMART SM00065 gaf_1 IPR003018 GAF domain 253 397 1.4E-14
Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPR003594 Histidine kinase/HSP90-like ATPase 608 718 3.5E-28
Gene3D G3DSA:3.40.50.2300 - - - 897 1045 5.5E-18
CDD cd17546 REC_hyHK_CKI1_RcsC-like - - 1048 1160 1.13516E-40
CDD cd19410 HK9-like_sensor - - 49 171 4.02508E-32
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 1048 1160 2.2E-27
CDD cd16922 HATPase_EvgS-ArcB-TorS-like - - 613 717 6.90217E-49
SUPERFAMILY SSF52172 CheY-like IPR011006 CheY-like superfamily 777 893 5.69E-24
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 704 717 2.8E-16
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 680 698 2.8E-16
CDD cd00156 REC - - 781 878 6.09825E-16
Pfam PF00512 His Kinase A (phospho-acceptor) domain IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain 494 561 2.4E-15
SMART SM00388 HisKA_10 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain 493 561 5.6E-19

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.